# This is the configuration file for the stochastic replication of Ovaskainen and Hanski 2000.
# In this experiment, we are focusing on steady state population size

#------------------------------------------------------#
######## ---- General experiment parameters ---- #######
#------------------------------------------------------#

OUTPUT_FOLDER=/Users/rebeccamancy/Dropbox/PhD/programming/LambdaM_Stochastic/output
INPUT_FOLDER=/Users/rebeccamancy/Dropbox/PhD/programming/LambdaM_Stochastic/output


#-------------------------------------------------------------#
######## ---- Parameters for setting up landscapes ---- #######
#-------------------------------------------------------------#

# Window parameters
MinX=0
MaxX=5
MinY=0
MaxY=5
# Numbers of patches to simulate
NUM_PATCHES=[2,4,8,16,32,64,128]
# Total patch area
TOT_AREA=6.25
# Number of replicate landscapes (i.e. sets of patch centres)
NUM_LANDSCAPES=100


#--------------------------------------------------------------#
######## ---- Simulation-related parameters (fixed) ---- #######
#--------------------------------------------------------------#

# QSD parameters
NUM_SEQS=10
TIME_WINDOW_LENGTH=500
NUM_DRAWS=200
RHAT_THRESHOLD=0.1
# Maximum number of states to index in the QSD
MAX_INDEXED=65536
TICKRATE=0.1
NUM_RAND_JUMPS=5

# Time-to-extinction simulation parameters
# Maximum time to run the simulation until (an integer)
MAX_TIME=100
NUM_REPS=1000
# Number of extinction paths that are stored to output
NUM_PATHS=20
OUTPUT_TYPE=TIME_UNTIL_EXTINCTION

# OUTPUT PARAMETERS
# Whether or not to display an image of the current status using StdDraw
DISPLAY=false
TRACE=false
HEADERS=true


#-----------------------------------------------------------#
######## ---- Dynamically-constructed parameters ---- #######
#-----------------------------------------------------------#

# Model parameters
# eParam = extinction parameter for species; cParam = colonisation param for species
# alpha = 1/mean migration distance
cParam=0.5
eParam=1
alpha=0.5

#
NON_EXTINCT_STATES=[1]



# Parameters for how to set up carrying capacity of patches initially (and parameters for the distribution)
#K_INIT=logNormal
#K_SCALE=0
#K_SHAPE=0.8