Inference of Transcription Factor Activity

Introduction

This site holds various bits of supplementary material for the work on inferring transcription factor activity from microarray data. Check here for any recent publications. More information may also be available at the authors' homepages: Simon Rogers, Raya Khanin and Mark Girolami

ICCSB 2006

[Gene Profiles] Gene Expression profiles under EL and CDC synchronisation
[TFA Profiles] TFA Profiles for EL and CDC synchronisations under joint model

Downloads

[C++ Code] Only compiled/tested on Scientific Linux. Requires Gnu Scientific Libraries (GSL). See read.me for usage and an example, contact srogers at dcs.gla.ac.uk for details.
[R Code] (coming soon)
[Slides from MASAMB 2006]

Acknowledgements

This work is supported by EPSRC grant EP/C010620/1, Stochastic Modelling and Statistical Inference of Gene Regulatory Pathways: Integrating Multiple Sources of Data