#include "stdafx.h" #include "../../snap/subgraphenum.h" #include "../../snap/graphcounter.h" int main(int argc, char* argv[]) { Env = TEnv(argc, argv, TNotify::StdNotify); Env.PrepArgs(TStr::Fmt("Motifs. build: %s, %s. Time: %s", __TIME__, __DATE__, TExeTm::GetCurTm())); TExeTm ExeTm; Try const TStr InFNm = Env.GetIfArgPrefixStr("-i:", "../as20graph.txt", "Input directed graph file (single directed edge per line)"); const int MotifSz = Env.GetIfArgPrefixInt("-m:", 3, "Motif size (has to be 3 or 4)"); const bool DrawMotifs = Env.GetIfArgPrefixBool("-d:", true, "Draw motif shapes (requires GraphViz)"); TStr OutFNm = Env.GetIfArgPrefixStr("-o:", "", "Output file prefix"); if (OutFNm.Empty()) { OutFNm = InFNm.GetFMid(); } EAssert(MotifSz==3 || MotifSz==4); // load graph PNGraph G; if (InFNm.GetFExt().GetLc()==".ungraph") { TFIn FIn(InFNm); G=TSnap::ConvertGraph(TUNGraph::Load(FIn), true); } else if (InFNm.GetFExt().GetLc()==".ngraph") { TFIn FIn(InFNm); G=TNGraph::Load(FIn); } else { G = TSnap::LoadEdgeList(InFNm, 0, 1); } bool IsOk = true; for (int nid = 0; nid < G->GetNodes(); nid++) { if (! G->IsNode(nid)) { IsOk=false; break; } } if (! IsOk) { printf("Nodes of the input graph have to be numbered 0...N-1\nRenumbering nodes...\n"); PNGraph OG = G; G = TNGraph::New(); TGraphEnumUtils::GetNormalizedGraph(OG, G); } // G = TSnap::GenRndGnm(100, Kilo(1)); // count frequency of connected subgraphs in G that have MotifSz nodes TD34GraphCounter GraphCounter(MotifSz); TSubGraphEnum GraphEnum; GraphEnum.GetSubGraphs(G, MotifSz, GraphCounter); FILE *F = fopen(TStr::Fmt("%s-counts.tab", OutFNm.CStr()).CStr(), "wt"); fprintf(F, "MotifId\tNodes\tEdges\tCount\n"); for (int i = 0; i < GraphCounter.Len(); i++) { const int gid = GraphCounter.GetId(i); PNGraph SG = GraphCounter.GetGraph(gid); if (DrawMotifs) { TGraphViz::Plot(SG, gvlNeato, TStr::Fmt("%s-motif%03d.gif", OutFNm.CStr(), i), TStr::Fmt("GId:%d Count: %llu", gid, GraphCounter.GetCnt(gid))); } fprintf(F, "%d\t%d\t%d\t%llu\n", gid, SG->GetNodes(), SG->GetEdges(), GraphCounter.GetCnt(gid)); } printf("done."); fclose(F); Catch printf("\nrun time: %s (%s)\n", ExeTm.GetTmStr(), TSecTm::GetCurTm().GetTmStr().CStr()); return 0; }